I guess my question would be; without switching to TRS, is it advantageous to chassis ground the insert returns and leave the internal cable shield hanging?
Ah, there's the crux of it: no, unless you change those jacks to TRS, you can't follow the AES48 scheme. What your next-best option would be depends on individual circumstance, I suppose, including whether you have problems picking up RF interference in your location.
Some of the jacks on the board (the input channels' line in jacks, for one) are already TRS, you just need to get in there and snip the "pin 1" connection to audio ground, and replace the plastic isolating jack washers with toothed metal washers that will electrically connect pin 1 right to the chassis.
Also, would it be advantageous to chassis ground the Group outputs and Main outputs the same way you did with the Aux's (pin 1 to chassis and audio ground to a common point with the two resistors)?
Group outputs and Main outputs are already balanced signals on XLR outs, so yes I chassis-grounded their pin 1's. Those two 12k resistors, one off each balanced leg (as mentioned above, these were added to the design to stabilize the EBOS circuits, and they do not appear on the schematic), then need to go somewhere else. It becomes a bit of a pain in the ass, since to do the wiring by the book, you then need to run an audio ground wire out to that point. But you might try just leaving those 12k resistors running to pin 1 (which has been newly made a chassis ground point, of course), and see if it's not all that terrible.
Or, if you're really trying to finesse improving this circuit, you would look into a replacement output driver. Something stable, that wouldn't need that 12k resistors hack. I think we started talking about other options earlier in this thread, or perhaps it was in another thread... I'd have to go back and look around.