I can tell you for certain that in guitar pedals at least, mojo is the use of components that are too large, inefficient, or inconsistent to be considered for use in modern design. For instance, if you use 630V axial caps for a 9V pedal. Even if they're new components, they're clearly not chosen for their appropriateness to the form factor or circuit needs.
I can actually give a serious answer using this idea, though whether it applies to this forum's interests is another matter.
Most electronic components are for far more "serious" uses than guitar pedals. I usually refer to guitar pedals as "stupid" electronics, because we typically try to exploit all the flaws that are engineered out of stuff. Like on this forum, we're all concerned about flat frequency response, low distortion, etc., but a fuzz pedal? The nastier the better, up to a point.
This also means that components in the aggregate probably aren't going to be used in dinky little 9V devices with negligible current draw.
So waay back, when guitar pedals were first starting out, people were grabbing amplifier parts, maybe rack gear parts, radio parts (it's amazing how many old fuzz circuits have bits of transistor radio circuits in them), etc. The parts don't really fit, they're overrated for the voltages and currents involved, and it can sort of look like a hodge podge, but then it ends up sounding really good.
Sometimes.
And the "sometimes" is important. All those lousy component tolerances build up and you get some fuzzes where the transistors were just magically the right match, or maybe a cap or two was out of spec in just the right way ...
And that's at least one form of mojo. It's the confluence of errors into something better than intended.
So why don't ICs have mojo usually? They're a single packaged thing that we have no control over. We can't claim to cook up just the right combination of discrete transistors to get the right sound. It doesn't matter if that statement *is* true, what matters is that if it were true, it would be true!
Funny enough, old metal can ICs DO have mojo to some people. Why? Well, because most of the time when you see them, they're a really old IC, and thus not "good" (e.g. 741).
Give it time and all through-hole components will be mojo. In some far-flung future, 12-atom-thick printed computer chips will be considered quaint and people will be nostalgic for non-quantum computers. Heck, I'm slightly nostalgic for the C64.