Ok, last week I wasn't able to work on this but today I got to work on it for a little while.
It's now WORKING.
The 100uf 25v cap that had ESR/short problems was the cause of it all. The cap did not allow the circuit to charge to the required 16v UVLO threshold. This circuit seems very sensitive to the amount of bulk capacitance on the VCC rail. When the 3842 starts up, the output stage pulls the VCC rail down considerably as it and if the cap value is insufficient then the IC fails to start the PWM cycle due to the Vref output being too low. If Vref is too low then the RT/CT (timing) circuit does not start and the PWM does not start as well. If the PWM does not start then the FET does not charge the HV transformer and the PWM IC does not get powered from the system and the IC stays in UVLO mode.
It's a vicious cycle!
I would suggest that this cap is changed to a low ESR type, as well as moved up in value from 100uf 25v to 220uf 35v. The 100uf cap seemed to allow too much ripple from switching the output drive this is why I would go to a higher value if possible.
here is the wiring pinout for those who want to know:
Yellow: -15v
Blue: return for +/- 15v rails
orange: +15v
Black: Return for +5v, +6v rails
Red: +5v
Purple: +6v (and pre pass transistor)
Brown: power good signal(?)
This is the troublemaker:
The system is pretty much a barebones SMPS without any truly fancy features. It has a overengineered feedback system but thankfully it's still very simple and I don't see why this system would cause problems.
That being said I don't see any type of protection for the VCC side of the PWM IC should there be a crazy line spike, just the high value/wattage resistor that bootstraps the startup voltage. I would have liked to seen some kind of protection for ESD on the VCC pin but most manufacturers don't see the sense in protecting a .25$ part with 1$ worth of parts. The FET seems worthy, a 2sk1118 Toshiba 600v 24AIdp part.