The only thing connecting 12V to ground are:
The heaters should always be connected.
The front panel switches the relay coils on for mic and 48 and for phase
The schematic shows a 12V light, is that installed, it would show some continuity.
The 78012 regulator I think would show open (not sure on that)
If you removed the tubes and had the relays switched off (phase off and mic/line set to line) and don't have a front panel light then I think you could see an open to ground on 12V. Might look not open as the caps charged up momentarily.
Just from looking at the schematic which is nicely drawn and an easy schematic to read .
http://www.gyraf.dk/gy_pd/g9/g9_sch.gif
A suggested test for the phase thing....
When you put it back together, turn off phantom power in case you touch the input, turn the amp on on and measure the resistance between pin 2 and 3 of the output xlr1. Then switch the phase and do the same measurements. Those should be pretty darn identical measurements. All you are doing there is measuring continuity from the output to the transformer, including the load resistors and the transformers secondary.
If they are not the same, that is not good.
Make the same measurement on output XLR2.
Why? I was thinking that you might have one side open in one phase. This can test normal depending upon the cabling and input, but might switch out the load resistors in one position. I have not looked at the PCB to see if this could happen, but it is a simple test.