SoundID (full disclosure, I consult and write for Sonarworks) is great to add the final touches to a well designed room and properly integrated speaker setup. SoundID can nail the stereo image by time-aligning the two speakers and correcting small performance differences between the two monitors.
You can’t fix time domain problems with EQ, so any room modes or reflections will not be corrected by SoundID. Have you experimented with the different phase modes of SounID? I find the “mixed” setting to be the most musical. I love SounID on my speakers and headphones but some people feel differently.