Return the unit to stock configuration, and see if it works. Its really hard to trouble shoot with mods added like this, since we can't be sure if its "just" the set-up of the switching.
Gustav
Just did, everything on it is working now!
Now I guess I should find out how this bypass switch should be wired. Something tells me it has to do with the two unmarked pins on the diagram circled below. It seems to be controlling the makeup gain (which would make sense). Any idea where I should wire those up to?
http://imgur.com/KK8iui3.jpg
Great news - problem isolated to the alternative switching.
The switching has been covered numerous times in this thread - sorry, I dont have direct experience setting it up.
Gustav
Alright I figured out a solution, with a compromise however. The desired operation of the switch is the light, compression, and makeup gain off when normal, and on when switched, however it's a DPDT switch so only two of those things can happen. Since I would rather vie for correct non-aestetic operation, I opted for the makeup gain and compression to be controlled with the switch, resulting in a diagram like this
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http://imgur.com/scjMxAP.jpg <--
Note the NC and NO are flipped because I want the compression enabled when switched. The compromise being the light will stay on all the time, but I'd take that for a properly working unit. If you want the light to switch on and off, just wire it normally and bridge two wires (if you look on the schematic you'll see they are the two pads connected to the makeup gain pot output). Another problem I had when wiring up was the compression didn't work at first, which confused me. I then tried to do a continuity test on the switch and found out NO wasn't working on one of the poles. Since the makeup gain didn't need a NO state, I just flipped the wiring and everything worked fine. Hope this helped some people looking for answers.